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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M3_history.csv b/deep_learning/Q1/outputs/alignment_debug/D0/M3_history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M3_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D0/M3_metrics.csv
new file mode 100644
index 0000000..1636be5
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D0/M3_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M3_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/D0/M3_trajectory.png
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index 0000000..382db6e
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/D0/M4_checkpoint.pt
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index 0000000..dca1d52
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_example_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/D0/M4_example_alignment.npz
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index 0000000..f76ea92
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/D0/M4_heatmap.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_history.csv b/deep_learning/Q1/outputs/alignment_debug/D0/M4_history.csv
new file mode 100644
index 0000000..2c02917
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D0/M4_history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D0/M4_metrics.csv
new file mode 100644
index 0000000..a06a08e
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D0/M4_metrics.csv
@@ -0,0 +1,4 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D0/M4_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/D0/M4_trajectory.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M3_checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/D1/M3_checkpoint.pt
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M3_example_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/D1/M3_example_alignment.npz
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index 0000000..4625b35
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M3_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/D1/M3_heatmap.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M3_history.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M3_history.csv
new file mode 100644
index 0000000..5d9ce51
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M3_history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M3_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M3_metrics.csv
new file mode 100644
index 0000000..3617410
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M3_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_checkpoint.pt
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index 0000000..e4a9b95
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_example_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_example_alignment.npz
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_heatmap.png
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index 0000000..de1054d
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_history.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_history.csv
new file mode 100644
index 0000000..c43775d
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_metrics.csv
new file mode 100644
index 0000000..046763b
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_metrics.csv
@@ -0,0 +1,4 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/D1/M4_noPE_trajectory.png
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index 0000000..017ee8b
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_checkpoint.pt
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index 0000000..0ac4838
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_example_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_example_alignment.npz
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index 0000000..a6f7ec4
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_heatmap.png
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index 0000000..72512aa
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_history.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_history.csv
new file mode 100644
index 0000000..ac89f51
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_metrics.csv
new file mode 100644
index 0000000..6538848
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D1/M4_sinPE_metrics.csv
@@ -0,0 +1,4 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M3_checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/D2/M3_checkpoint.pt
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M3_example_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/D2/M3_example_alignment.npz
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M3_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/D2/M3_heatmap.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M3_history.csv b/deep_learning/Q1/outputs/alignment_debug/D2/M3_history.csv
new file mode 100644
index 0000000..3ee752b
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M3_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D2/M3_metrics.csv
new file mode 100644
index 0000000..eddf1f6
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D2/M3_metrics.csv
@@ -0,0 +1,301 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D2/M4_sinPE_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D2/M4_sinPE_metrics.csv
new file mode 100644
index 0000000..6a8ee51
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D2/M4_sinPE_metrics.csv
@@ -0,0 +1,301 @@
+experiment,method,sample_id,modality,mvr,normalized_entropy,c_row,c_far,expected_time_start,expected_time_end,trajectory_span,mean_absolute_time_center_error,gaussian_target_kl
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D3/M3_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D3/M3_metrics.csv
new file mode 100644
index 0000000..a683f9c
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D3/M3_metrics.csv
@@ -0,0 +1,301 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_metrics.csv
new file mode 100644
index 0000000..3b0a29f
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_metrics.csv
@@ -0,0 +1,301 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_trajectory.png
new file mode 100644
index 0000000..39d86f5
Binary files /dev/null and b/deep_learning/Q1/outputs/alignment_debug/D3/M4_sinPE_trajectory.png differ
diff --git a/deep_learning/Q1/outputs/alignment_debug/debug_summary.csv b/deep_learning/Q1/outputs/alignment_debug/debug_summary.csv
new file mode 100644
index 0000000..2d1b5b7
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/debug_summary.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/experiment.log b/deep_learning/Q1/outputs/alignment_debug/experiment.log
new file mode 100644
index 0000000..3b234d8
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/experiment.log
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+[D0 M3] samples=1 steps=1000 sinusoidal_PE=False lr=0.001
+[D0 M3 step 100/1000] total=0.0007 align=4.0156 span=0.0000 band=0.0001 grad-band(Q/K/Z)=5.83e-05/9.12e-05/NA
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+[D0 M3 step 300/1000] total=0.0005 align=3.8992 span=0.0000 band=0.0001 grad-band(Q/K/Z)=8.11e-05/0.000166/NA
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+[D0 M3 step 500/1000] total=0.0001 align=3.9884 span=0.0000 band=0.0000 grad-band(Q/K/Z)=1.06e-06/1.77e-06/NA
+[D0 M3 step 600/1000] total=0.0001 align=3.9927 span=0.0000 band=0.0000 grad-band(Q/K/Z)=8.53e-07/1.48e-06/NA
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+[D0 M3 step 1000/1000] total=0.0001 align=4.0008 span=0.0000 band=0.0000 grad-band(Q/K/Z)=1.06e-06/1.7e-06/NA
+[done D0 M3] final total=0.0001 align=4.0008; metrics=3
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+[D0 M4 step 600/1000] total=0.0007 align=2.7104 span=0.0000 band=0.0001 grad-band(Q/K/Z)=1.24e-06/1.71e-06/6.006500825606054e-06
+[D0 M4 step 700/1000] total=0.0007 align=2.7257 span=0.0000 band=0.0001 grad-band(Q/K/Z)=9.71e-07/1.35e-06/4.651487415685551e-06
+[D0 M4 step 800/1000] total=0.0007 align=2.7392 span=0.0000 band=0.0001 grad-band(Q/K/Z)=7.81e-07/1.11e-06/3.715925686265109e-06
+[D0 M4 step 900/1000] total=0.0007 align=2.7513 span=0.0000 band=0.0001 grad-band(Q/K/Z)=6.43e-07/9.34e-07/3.0371497814485338e-06
+[D0 M4 step 1000/1000] total=0.0007 align=2.7618 span=0.0000 band=0.0001 grad-band(Q/K/Z)=5.44e-07/8.07e-07/2.539506340326625e-06
+[done D0 M4] final total=0.0007 align=2.7618; metrics=3
+[D1 M3] samples=1 steps=1000 sinusoidal_PE=False lr=0.001
+[D1 M3 step 100/1000] total=0.3147 align=0.3147 span=0.0644 band=0.0039 grad-align(Q/K/Z)=0.0166/0.0208/NA
+[D1 M3 step 200/1000] total=0.2819 align=0.2819 span=0.0518 band=0.0030 grad-align(Q/K/Z)=0.025/0.0356/NA
+[D1 M3 step 300/1000] total=0.2723 align=0.2723 span=0.0480 band=0.0028 grad-align(Q/K/Z)=0.0308/0.0511/NA
+[D1 M3 step 400/1000] total=0.2684 align=0.2684 span=0.0457 band=0.0027 grad-align(Q/K/Z)=0.0308/0.0479/NA
+[D1 M3 step 500/1000] total=0.2661 align=0.2661 span=0.0444 band=0.0026 grad-align(Q/K/Z)=0.025/0.0495/NA
+[D1 M3 step 600/1000] total=0.2649 align=0.2649 span=0.0432 band=0.0026 grad-align(Q/K/Z)=0.0457/0.113/NA
+[D1 M3 step 700/1000] total=0.2634 align=0.2634 span=0.0416 band=0.0025 grad-align(Q/K/Z)=0.0192/0.047/NA
+[D1 M3 step 800/1000] total=0.2627 align=0.2627 span=0.0401 band=0.0024 grad-align(Q/K/Z)=0.0205/0.0313/NA
+[D1 M3 step 900/1000] total=0.2623 align=0.2623 span=0.0384 band=0.0024 grad-align(Q/K/Z)=0.0247/0.05/NA
+[D1 M3 step 1000/1000] total=0.2630 align=0.2630 span=0.0392 band=0.0025 grad-align(Q/K/Z)=0.0776/0.22/NA
+[done D1 M3] final total=0.2630 align=0.2630; metrics=3
+[D1 M4_noPE] samples=1 steps=1000 sinusoidal_PE=False lr=0.001
+[D1 M4_noPE step 100/1000] total=0.2883 align=0.2883 span=0.1017 band=0.0080 grad-align(Q/K/Z)=0.00228/0.00318/0.004216424189507961
+[D1 M4_noPE step 200/1000] total=0.2269 align=0.2269 span=0.0498 band=0.0041 grad-align(Q/K/Z)=0.00118/0.00213/0.002313559642061591
+[D1 M4_noPE step 300/1000] total=0.2019 align=0.2019 span=0.0365 band=0.0030 grad-align(Q/K/Z)=0.000522/0.000949/0.0009414505329914391
+[D1 M4_noPE step 400/1000] total=0.1950 align=0.1950 span=0.0318 band=0.0026 grad-align(Q/K/Z)=0.000319/0.000536/0.0005940448609180748
+[D1 M4_noPE step 500/1000] total=0.1915 align=0.1915 span=0.0293 band=0.0025 grad-align(Q/K/Z)=0.000635/0.00405/0.0008793329470790923
+[D1 M4_noPE step 600/1000] total=0.1890 align=0.1890 span=0.0280 band=0.0024 grad-align(Q/K/Z)=0.000517/0.00358/0.000659892160911113
+[D1 M4_noPE step 700/1000] total=0.1869 align=0.1869 span=0.0271 band=0.0023 grad-align(Q/K/Z)=0.000668/0.00481/0.0008425512933172286
+[D1 M4_noPE step 800/1000] total=0.1850 align=0.1850 span=0.0265 band=0.0023 grad-align(Q/K/Z)=0.000353/0.00158/0.0004897429025731981
+[D1 M4_noPE step 900/1000] total=0.1840 align=0.1840 span=0.0258 band=0.0022 grad-align(Q/K/Z)=0.000835/0.00496/0.0009656989714130759
+[D1 M4_noPE step 1000/1000] total=0.1832 align=0.1832 span=0.0251 band=0.0022 grad-align(Q/K/Z)=0.00106/0.00433/0.001278208801522851
+[done D1 M4_noPE] final total=0.1832 align=0.1832; metrics=3
+[D1 M4_sinPE] samples=1 steps=1000 sinusoidal_PE=True lr=0.001
+[D1 M4_sinPE step 100/1000] total=0.2745 align=0.2745 span=0.0882 band=0.0067 grad-align(Q/K/Z)=0.00297/0.00435/0.0032130267936736345
+[D1 M4_sinPE step 200/1000] total=0.2118 align=0.2118 span=0.0447 band=0.0032 grad-align(Q/K/Z)=0.00107/0.00175/0.001607082667760551
+[D1 M4_sinPE step 300/1000] total=0.1967 align=0.1967 span=0.0337 band=0.0026 grad-align(Q/K/Z)=0.000582/0.000954/0.0008562988368794322
+[D1 M4_sinPE step 400/1000] total=0.1902 align=0.1902 span=0.0296 band=0.0023 grad-align(Q/K/Z)=0.000328/0.000718/0.0005115939420647919
+[D1 M4_sinPE step 500/1000] total=0.1872 align=0.1872 span=0.0272 band=0.0022 grad-align(Q/K/Z)=0.00029/0.000911/0.00046330280019901693
+[D1 M4_sinPE step 600/1000] total=0.1851 align=0.1851 span=0.0252 band=0.0021 grad-align(Q/K/Z)=0.00186/0.00929/0.0019628412555903196
+[D1 M4_sinPE step 700/1000] total=0.1835 align=0.1835 span=0.0235 band=0.0020 grad-align(Q/K/Z)=0.000776/0.00248/0.0006809488986618817
+[D1 M4_sinPE step 800/1000] total=0.1828 align=0.1828 span=0.0233 band=0.0020 grad-align(Q/K/Z)=0.00177/0.00702/0.002244245493784547
+[D1 M4_sinPE step 900/1000] total=0.1822 align=0.1822 span=0.0229 band=0.0020 grad-align(Q/K/Z)=0.0015/0.00715/0.0013185743009671569
+[D1 M4_sinPE step 1000/1000] total=0.1817 align=0.1817 span=0.0227 band=0.0020 grad-align(Q/K/Z)=0.00147/0.00721/0.0012832485372200608
+[done D1 M4_sinPE] final total=0.1817 align=0.1817; metrics=3
+[D2 M3] samples=100 steps=500 sinusoidal_PE=False lr=0.001
+[D2 M3 step 100/500] total=0.7070 align=0.7070 span=0.2982 band=0.0197 grad-align(Q/K/Z)=0.0544/0.0544/NA
+[D2 M3 step 200/500] total=0.5588 align=0.5588 span=0.2068 band=0.0079 grad-align(Q/K/Z)=0.0866/0.0974/NA
+[D2 M3 step 300/500] total=0.5614 align=0.5614 span=0.1948 band=0.0119 grad-align(Q/K/Z)=0.0565/0.0439/NA
+[D2 M3 step 400/500] total=0.5531 align=0.5531 span=0.1878 band=0.0117 grad-align(Q/K/Z)=0.0504/0.0364/NA
+[D2 M3 step 500/500] total=0.5194 align=0.5194 span=0.1950 band=0.0098 grad-align(Q/K/Z)=0.0576/0.0496/NA
+[done D2 M3] final total=0.5194 align=0.5194; metrics=300
+[D2 M4_sinPE] samples=100 steps=500 sinusoidal_PE=True lr=0.001
+[D2 M4_sinPE step 100/500] total=0.7284 align=0.7284 span=0.2934 band=0.0254 grad-align(Q/K/Z)=0.0157/0.0175/0.015301910229027271
+[D2 M4_sinPE step 200/500] total=0.6799 align=0.6799 span=0.2622 band=0.0227 grad-align(Q/K/Z)=0.0163/0.0208/0.011812740005552769
+[D2 M4_sinPE step 300/500] total=0.6770 align=0.6770 span=0.2819 band=0.0250 grad-align(Q/K/Z)=0.0158/0.0214/0.013132783584296703
+[D2 M4_sinPE step 400/500] total=0.6383 align=0.6383 span=0.2607 band=0.0223 grad-align(Q/K/Z)=0.00825/0.0161/0.007149462588131428
+[D2 M4_sinPE step 500/500] total=0.6222 align=0.6222 span=0.2545 band=0.0215 grad-align(Q/K/Z)=0.0108/0.0213/0.00810039509087801
+[done D2 M4_sinPE] final total=0.6222 align=0.6222; metrics=300
+[D3 M3] samples=100 steps=500 sinusoidal_PE=False lr=0.001
+[D3 M3 step 100/500] total=4.1864 align=0.9900 span=0.4564 band=0.0376 grad-align(Q/K/Z)=0.0581/0.0607/NA
+[D3 M3 step 200/500] total=3.2114 align=0.9275 span=0.4127 band=0.0214 grad-align(Q/K/Z)=0.0618/0.069/NA
+[D3 M3 step 300/500] total=2.9262 align=0.9328 span=0.3966 band=0.0300 grad-align(Q/K/Z)=0.0504/0.0546/NA
+[D3 M3 step 400/500] total=2.5046 align=0.9455 span=0.4341 band=0.0324 grad-align(Q/K/Z)=0.0404/0.0427/NA
+[D3 M3 step 500/500] total=2.3617 align=0.8575 span=0.3872 band=0.0244 grad-align(Q/K/Z)=0.0312/0.0323/NA
+[done D3 M3] final total=2.3617 align=0.8575; metrics=300
+[D3 M4_sinPE] samples=100 steps=500 sinusoidal_PE=True lr=0.001
+[D3 M4_sinPE step 100/500] total=4.6514 align=0.8535 span=0.3465 band=0.0307 grad-align(Q/K/Z)=0.0136/0.0326/0.012736599892377853
+[D3 M4_sinPE step 200/500] total=3.6226 align=0.8372 span=0.3601 band=0.0305 grad-align(Q/K/Z)=0.0227/0.0515/0.018048657104372978
+[D3 M4_sinPE step 300/500] total=3.3903 align=0.8115 span=0.3256 band=0.0298 grad-align(Q/K/Z)=0.0153/0.0393/0.017227167263627052
+[D3 M4_sinPE step 400/500] total=3.0099 align=0.7362 span=0.2919 band=0.0249 grad-align(Q/K/Z)=0.0118/0.0297/0.01380767859518528
+[D3 M4_sinPE step 500/500] total=2.5226 align=0.7414 span=0.3080 band=0.0257 grad-align(Q/K/Z)=0.0128/0.0334/0.019335519522428513
+[done D3 M4_sinPE] final total=2.5226 align=0.7414; metrics=300
+[all done] elapsed=103.7s output=/home/gloamxun/modeling_zhaocui/Q1/outputs/alignment_debug
diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/M3_noSourceTime_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/M3_noSourceTime_heatmap.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/M3_noSourceTime_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/M3_noSourceTime_trajectory.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/checkpoint.pt
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/heldout_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/heldout_alignment.npz
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/heldout_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/heldout_metrics.csv
new file mode 100644
index 0000000..0c1ffd4
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/heldout_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_noSourceTime/history.csv
new file mode 100644
index 0000000..a60c4b3
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M3_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/M3_sourceTime/history.csv
new file mode 100644
index 0000000..c9a8358
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M4_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/M4_noSourceTime/history.csv
new file mode 100644
index 0000000..3979a98
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/M4_noSourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/M4_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/M4_sourceTime/history.csv
new file mode 100644
index 0000000..b952854
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/M4_sourceTime/history.csv
@@ -0,0 +1,501 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M3_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M3_noSourceTime/history.csv
new file mode 100644
index 0000000..b700610
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M3_noSourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/heldout_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/heldout_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/history.csv
new file mode 100644
index 0000000..b87e4ef
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/history.csv
@@ -0,0 +1,501 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/M4_sourceTime_heatmap.png b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/M4_sourceTime_heatmap.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/M4_sourceTime_trajectory.png b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/M4_sourceTime_trajectory.png
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/checkpoint.pt b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/checkpoint.pt
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/heldout_alignment.npz b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/heldout_alignment.npz
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/heldout_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/heldout_metrics.csv
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--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/heldout_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/history.csv
new file mode 100644
index 0000000..f37882d
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/M4_sourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/heldout_summary.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/heldout_summary.csv
new file mode 100644
index 0000000..d02e371
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/heldout_summary.csv
@@ -0,0 +1,13 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/per_sample_metrics.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/per_sample_metrics.csv
new file mode 100644
index 0000000..0242b0f
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/per_sample_metrics.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/run_manifest.json b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/run_manifest.json
new file mode 100644
index 0000000..e923a94
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/run_manifest.json
@@ -0,0 +1,108 @@
+{
+  "created_utc": "2026-09-23T11:33:20.759356+00:00",
+  "experiment": "D5",
+  "fold": 2,
+  "heldout_example": "-THoVjtIkeU/12",
+  "train_sample_count": 80,
+  "heldout_sample_count": 20,
+  "train_video_ids": [
+    "-3g5yACwYnA",
+    "-3nNcZdcdvU",
+    "-6rXp3zJ3kc",
+    "-9y-fZ3swSY",
+    "-AUZQgSxyPQ",
+    "-HwX2H8Z4hY",
+    "-I_e4mIh0yE",
+    "-MeTTeMJBNc",
+    "-NFrJFQijFE",
+    "-RfYyzHpjk4",
+    "-UUCSKoHeMA",
+    "-UacrmKiTn4",
+    "-a55Q6RWvTA",
+    "-aNfi7CP8vM",
+    "-aqamKhZ1Ec",
+    "-dxfTGcXJoc",
+    "-egA8-b7-3M",
+    "-hnBHBN8p5A",
+    "-iRBcNs9oI8",
+    "-mJ2ud6oKI8",
+    "-qDkUB0GgYY",
+    "-ri04Z7vwnc",
+    "-s9qJ7ATP7w",
+    "-t217m2on-s",
+    "-tANM6ETl_M",
+    "-tPCytz4rww",
+    "-uywlfIYOS8",
+    "-vxjVxOeScU",
+    "-wMB_hJL-3o",
+    "-yRb-Jum7EQ"
+  ],
+  "heldout_video_ids": [
+    "-571d8cVauQ",
+    "-HeZS2-Prhc",
+    "-THoVjtIkeU",
+    "-UuX1xuaiiE",
+    "-lzEya4AM_4",
+    "-mqbVkbCndg",
+    "-wny0OAz3g8"
+  ],
+  "video_id_overlap": [],
+  "seed": 42,
+  "device": "cuda",
+  "gpu_name": "NVIDIA GeForce RTX 5070 Ti",
+  "python": "3.14.7",
+  "torch": "2.14.0+cu130",
+  "grid_size": 50,
+  "optimizer": "AdamW",
+  "learning_rate": 0.001,
+  "steps_per_model": 500,
+  "batch_size": 8,
+  "loss": "timestamp-derived Gaussian target KL only",
+  "source_position_encoding": "fixed Fourier time code added to source key only; value remains projected content",
+  "query_position_encoding": "M3 adds Fourier code at text-time centers; M4 uses fixed absolute sinusoidal slots plus the matching Fourier code at uniform slot centers",
+  "normalization_fit_on_train_only": true,
+  "variants": [
+    {
+      "experiment": "D5",
+      "method": "M3",
+      "variant": "M3_noSourceTime",
+      "source_time_encoding": false,
+      "final_training_kl": 0.6294236779212952,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_02/M3_noSourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M3",
+      "variant": "M3_sourceTime",
+      "source_time_encoding": true,
+      "final_training_kl": 0.042629558593034744,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_02/M3_sourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M4",
+      "variant": "M4_noSourceTime",
+      "source_time_encoding": false,
+      "final_training_kl": 0.6466677188873291,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_02/M4_noSourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M4",
+      "variant": "M4_sourceTime",
+      "source_time_encoding": true,
+      "final_training_kl": 0.015042463317513466,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_02/M4_sourceTime/checkpoint.pt"
+    }
+  ],
+  "elapsed_seconds": 50.369210958480835,
+  "interpretation_limits": [
+    "This is one grouped video_id split and one seed; it is a focused held-out diagnostic, not a final method ranking.",
+    "The Gaussian timestamp target is a weak temporal prior, not human alignment ground truth.",
+    "The target supplies approximate time location; this experiment tests transfer of the time-conditioned attention mechanism, not semantic correctness by itself."
+  ]
+}
\ No newline at end of file
diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/training_history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/training_history.csv
new file mode 100644
index 0000000..a4a7e1c
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_02/training_history.csv
@@ -0,0 +1,2001 @@
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_noSourceTime/history.csv
new file mode 100644
index 0000000..fd0ea21
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_noSourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_sourceTime/history.csv
new file mode 100644
index 0000000..705cef3
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M3_sourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_noSourceTime/history.csv
new file mode 100644
index 0000000..a396ce7
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_noSourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_sourceTime/history.csv
new file mode 100644
index 0000000..442e7e4
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/M4_sourceTime/history.csv
@@ -0,0 +1,501 @@
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new file mode 100644
index 0000000..fc22b3b
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new file mode 100644
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/run_manifest.json b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/run_manifest.json
new file mode 100644
index 0000000..d2c7c76
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/run_manifest.json
@@ -0,0 +1,108 @@
+{
+  "created_utc": "2026-09-23T11:34:17.174001+00:00",
+  "experiment": "D5",
+  "fold": 3,
+  "heldout_example": "-HwX2H8Z4hY/2",
+  "train_sample_count": 80,
+  "heldout_sample_count": 20,
+  "train_video_ids": [
+    "-3g5yACwYnA",
+    "-3nNcZdcdvU",
+    "-571d8cVauQ",
+    "-6rXp3zJ3kc",
+    "-9y-fZ3swSY",
+    "-HeZS2-Prhc",
+    "-I_e4mIh0yE",
+    "-MeTTeMJBNc",
+    "-NFrJFQijFE",
+    "-THoVjtIkeU",
+    "-UUCSKoHeMA",
+    "-UacrmKiTn4",
+    "-UuX1xuaiiE",
+    "-a55Q6RWvTA",
+    "-aNfi7CP8vM",
+    "-dxfTGcXJoc",
+    "-egA8-b7-3M",
+    "-iRBcNs9oI8",
+    "-lzEya4AM_4",
+    "-mJ2ud6oKI8",
+    "-mqbVkbCndg",
+    "-qDkUB0GgYY",
+    "-ri04Z7vwnc",
+    "-t217m2on-s",
+    "-tANM6ETl_M",
+    "-tPCytz4rww",
+    "-uywlfIYOS8",
+    "-wny0OAz3g8",
+    "-yRb-Jum7EQ"
+  ],
+  "heldout_video_ids": [
+    "-AUZQgSxyPQ",
+    "-HwX2H8Z4hY",
+    "-RfYyzHpjk4",
+    "-aqamKhZ1Ec",
+    "-hnBHBN8p5A",
+    "-s9qJ7ATP7w",
+    "-vxjVxOeScU",
+    "-wMB_hJL-3o"
+  ],
+  "video_id_overlap": [],
+  "seed": 42,
+  "device": "cuda",
+  "gpu_name": "NVIDIA GeForce RTX 5070 Ti",
+  "python": "3.14.7",
+  "torch": "2.14.0+cu130",
+  "grid_size": 50,
+  "optimizer": "AdamW",
+  "learning_rate": 0.001,
+  "steps_per_model": 500,
+  "batch_size": 8,
+  "loss": "timestamp-derived Gaussian target KL only",
+  "source_position_encoding": "fixed Fourier time code added to source key only; value remains projected content",
+  "query_position_encoding": "M3 adds Fourier code at text-time centers; M4 uses fixed absolute sinusoidal slots plus the matching Fourier code at uniform slot centers",
+  "normalization_fit_on_train_only": true,
+  "variants": [
+    {
+      "experiment": "D5",
+      "method": "M3",
+      "variant": "M3_noSourceTime",
+      "source_time_encoding": false,
+      "final_training_kl": 0.4578649699687958,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_03/M3_noSourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M3",
+      "variant": "M3_sourceTime",
+      "source_time_encoding": true,
+      "final_training_kl": 0.03286057338118553,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_03/M3_sourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M4",
+      "variant": "M4_noSourceTime",
+      "source_time_encoding": false,
+      "final_training_kl": 0.6095466017723083,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_03/M4_noSourceTime/checkpoint.pt"
+    },
+    {
+      "experiment": "D5",
+      "method": "M4",
+      "variant": "M4_sourceTime",
+      "source_time_encoding": true,
+      "final_training_kl": 0.012183131650090218,
+      "heldout_sample_count": 20,
+      "checkpoint": "outputs/alignment_debug/heldout/fold_03/M4_sourceTime/checkpoint.pt"
+    }
+  ],
+  "elapsed_seconds": 54.028491497039795,
+  "interpretation_limits": [
+    "This is one grouped video_id split and one seed; it is a focused held-out diagnostic, not a final method ranking.",
+    "The Gaussian timestamp target is a weak temporal prior, not human alignment ground truth.",
+    "The target supplies approximate time location; this experiment tests transfer of the time-conditioned attention mechanism, not semantic correctness by itself."
+  ]
+}
\ No newline at end of file
diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/training_history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/training_history.csv
new file mode 100644
index 0000000..b61ee55
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_03/training_history.csv
@@ -0,0 +1,2001 @@
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index 0000000..22d1711
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M3_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M3_noSourceTime/history.csv
new file mode 100644
index 0000000..3f7b479
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M3_noSourceTime/history.csv
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M3_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M3_sourceTime/history.csv
new file mode 100644
index 0000000..c03dac5
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M4_noSourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M4_noSourceTime/history.csv
new file mode 100644
index 0000000..ddbd79c
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M4_sourceTime/history.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/M4_sourceTime/history.csv
new file mode 100644
index 0000000..57130f2
--- /dev/null
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diff --git a/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/heldout_summary.csv b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/heldout_summary.csv
new file mode 100644
index 0000000..26077ff
--- /dev/null
+++ b/deep_learning/Q1/outputs/alignment_debug/heldout/fold_04/heldout_summary.csv
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